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Creators/Authors contains: "Xie, Wei"

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  1. Crop production is among the most extensive human activities on the planet – with critical importance for global food security, land use, environmental burden, and climate. Yet despite the key role that croplands play in global land use and Earth systems, there remains little understanding of how spatial patterns of global crop cultivation have recently evolved and which crops have contributed most to these changes. Here we construct a new data library of subnational crop-specific irrigated and rainfed harvested area statistics and combine it with global gridded land cover products to develop a global gridded (5-arcminute) irrigated and rainfed cropped area (MIRCA-OS) dataset for the years 2000 to 2015 for 23 crop classes. These global data products support critical insights into the spatially detailed patterns of irrigated and rainfed cropland change since the start of the century and provide an improved foundation for a wide array of global assessments spanning agriculture, water resource management, land use change, climate impact, and sustainable development. 
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    Free, publicly-accessible full text available December 1, 2026
  2. Free, publicly-accessible full text available December 1, 2026
  3. Free, publicly-accessible full text available July 1, 2026
  4. Abstract Large-scale manufacturing of induced pluripotent stem cells (iPSCs) is essential for cell therapies and regenerative medicines. Yet, iPSCs form large cell aggregates in suspension bioreactors, resulting in insufficient nutrient supply and extra metabolic waste build-up for the cells located at the core. Since subtle changes in micro-environment can lead to a heterogeneous cell population, a novel Biological System-of-Systems (Bio-SoS) framework is proposed to model cell-to-cell interactions, spatial and metabolic heterogeneity, and cell response to micro-environmental variation. Building on stochastic metabolic reaction network, aggregation kinetics, and reaction-diffusion mechanisms, the Bio-SoS model characterizes causal interdependencies at individual cell, aggregate, and cell population levels. It has a modular design that enables data integration and improves predictions for different monolayer and aggregate culture processes. In addition, a variance decomposition analysis is derived to quantify the impact of factors (i.e., aggregate size) on cell product health and quality heterogeneity. 
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  5. RNA structure and functional dynamics play fundamental roles in controlling biological systems. Molecular dynamics simulation, which can characterize interactions at an atomistic level, can advance the understanding on newdrug discovery, manufacturing, and delivery mechanisms. However, it is computationally unattainable to support the development of a digital twin for enzymatic reaction network mechanism learning, and endto-end bioprocess design and control. Thus, we create a hybrid (“mechanistic + machine learning") model characterizing the interdependence of RNA structure and functional dynamics from atomistic to macroscopic levels. To assess the proposed modeling strategy, we consider RNA degradation which is a critical process in cellular biology that affects gene expression. The empirical study of RNA lifetime prediction demonstrates the promising performance of the proposed multi-scale bioprocess hybrid modeling strategy. 
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  6. Abstract The prompt emission mechanism of gamma-ray bursts (GRBs) is still unclear, and the time-resolved spectral analysis of GRBs is a powerful tool for studying their underlying physical processes. We performed a detailed time-resolved spectral analysis of 78 bright long GRB samples detected by Fermi/Gamma-ray Burst Monitor. A total of 1490 spectra were obtained and their properties were studied using a typical Band-shape model. First, the parameter distributions of the time-resolved spectrum are given as follows: the low-energy spectral indexα∼ − 0.72, high-energy spectral indexβ∼ − 2.42, the peak energyEp∼ 221.69 keV, and the energy fluxF∼ 7.49 × 10−6erg cm−2s−1. More than 80% of the bursts exhibit the hardest low-energy spectral index α max exceeding the synchrotron limit (−2/3). Second, the evolution patterns ofαandEpwere statistically analyzed. The results show that for multi-pulse GRBs the intensity-tracking pattern is more common than the hard-to-soft pattern in the evolution of bothEpandα. The hard-to-soft pattern is generally shown in single-pulse GRBs or in the initial pulse of multi-pulse GRBs. Finally, we found a significant positive correlation betweenFandEp, with half of the samples exhibiting a positive correlation betweenFandα. We discussed the spectral evolution of different radiation models. The diversity of spectral evolution patterns indicates that there may be more than one radiation mechanism occurring in the GRB radiation process, including photospheric radiation and synchrotron radiation. However, it may also involve only one radiation mechanism, but more complicated physical details need to be considered. 
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  7. Abstract The rapidly expanding market for regenerative medicines and cell therapies highlights the need to advance the understanding of cellular metabolisms and improve the prediction of cultivation production process for human induced pluripotent stem cells (iPSCs). In this paper, a metabolic kinetic model was developed to characterize the underlying mechanisms of iPSC culture process, which can predict cell response to environmental perturbation and support process control. This model focuses on the central carbon metabolic network, including glycolysis, pentose phosphate pathway, tricarboxylic acid cycle, and amino acid metabolism, which plays a crucial role to support iPSC proliferation. Heterogeneous measures of extracellular metabolites and multiple isotopic tracers collected under multiple conditions were used to learn metabolic regulatory mechanisms. Systematic cross‐validation confirmed the model's performance in terms of providing reliable predictions on cellular metabolism and culture process dynamics under various culture conditions. Thus, the developed mechanistic kinetic model can support process control strategies to strategically select optimal cell culture conditions at different times, ensure cell product functionality, and facilitate large‐scale manufacturing of regenerative medicines and cell therapies. 
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